How to Record PAYG Instalments in Xero and MYOB

The rule that sorts every version of this question: a PAYG instalment is a prepayment of income tax, so it is never an expense. It sits on the balance sheet until your assessment arrives. PAYG withholding, the tax you take from employees under the system described in the PAYG withholding guide, is the opposite: money you owe, held in a liability account. Both packages handle the mechanics well once the accounts are pointed at the right places, and both leave the instalment account for you to choose.

PAYG-I vs PAYG-W: get this right first

PAYG instalments (PAYG-I, field 5A)

  • Prepayment of your own income tax
  • Balance sheet: asset (prepayment) or against a tax provision
  • Never an expense in the profit and loss
  • Cleared when the notice of assessment credits it

PAYG withholding (PAYG-W, field 4)

  • Employees' tax you are holding on their behalf
  • Liability account, built up each pay run
  • Cleared when you remit on the activity statement
  • Also never an expense; the gross wage already was

Coding an instalment to an expense account is the classic error: it understates profit and then overstates it when the accountant reverses the entry at year end. If you are unsure what your quarterly figure should even be, the PAYG instalment calculator gives you the number to check the notice against.

Recording in Xero

  1. Run the Activity Statement

    In the Reporting menu, select All reports, then open the Activity Statement.

  2. Create the draft bill on lodgment

    Click Lodge & create draft bill (or Finalise & create draft bill if not connected to the ATO). Xero creates a bill that splits the liability line by line.

  3. Check the account on each line

    GST and PAYG withholding allocate automatically to the system GST and PAYG accounts from your payroll settings. The PAYG instalment line does not auto-allocate: Xero requires you to enter the account for it yourself. Point it at your income tax prepayment or provision account.

  4. Keep interest and penalties separate

    Any general interest charge or penalty goes on its own line to its own account, never into the GST or PAYG accounts.

  5. Approve and reconcile

    Approve the bill, then match the bank payment with find & match. A spend money transaction works as the lighter alternative when you skip the bill.

Recording in MYOB

  1. Go to Banking, then Spend money

    In MYOB Business it is the Banking menu > Spend money; in AccountRight, the Banking command centre > Spend Money. Choose the bank account the payment left from, with amounts set to tax inclusive and the N-T tax code on the allocation lines.

  2. One line per BAS field

    Copy the fields off the completed statement: PAYG withholding (field 4) to its 2-XXXX liability account, and the PAYG instalment (field 5A) to the instalment account. MYOB's own guidance describes 5A as "the prepayment of PAYG" and illustrates it against a 1-XXXX asset account (or an equity account in some setups), not an expense.

  3. Round separately

    The BAS reports whole dollars, so add a small adjustments and rounding line rather than forcing a field to balance.

  4. Refunds mirror the entry

    An ATO refund is a Receive money transaction with the same lines and the signs reversed.

The accounting treatment behind both

For a sole trader, income tax is personal, not a business cost, so instalments paid from the business account are really drawings or a personal prepayment; many bookkeepers use an equity account for exactly that reason. For a company, instalments accumulate as a debit against the income tax provision, and the year-end tax expense entry trues the provision up to the assessed figure. Either way the instalment meets its match at assessment, when the credit lands, as explained in the PAYG instalments guide. Payment timing for the underlying quarters follows the standard PAYG due dates.

Frequently asked questions

How do I record a PAYG instalment in Xero?
Lodge or finalise the Activity Statement and let Xero create the draft bill, then manually set the account on the instalment line, since only GST and PAYG withholding auto-allocate. Use an income tax prepayment or provision account, approve, and reconcile the bank payment.
How do I record a PAYG instalment in MYOB?
Banking > Spend money, one line per BAS field from your completed statement. Field 5A (PAYG instalments) goes to an asset or equity account as a prepayment of income tax; field 4 (PAYG withholding) clears the payroll liability account. Use the N-T tax code.
Is a PAYG instalment an expense?
No. It prepays income tax, so it belongs on the balance sheet until the assessment applies the credit. Coding it to an expense account misstates profit in both directions across the year.
What account should PAYG withholding go to?
A liability account that payroll builds up each pay run, typically numbered 2-XXXX in MYOB or the system PAYG account in Xero. Remitting on the activity statement clears it.
Where do GIC or late fees go?
To their own account on a separate transaction line. Both Xero and MYOB warn against mixing them into the GST or PAYG lines, and GIC incurred from 1 July 2025 is not deductible.

Sources

Related resources

Narelle Hartigan
Narelle Hartigan, CPA Verified Expert
Tax Accountant & PAYG Specialist

Narelle Hartigan is a CPA-qualified tax accountant with over a decade of experience in Australian personal taxation and payroll. She founded PAYG Calculator Australia to make tax withholding easy for every Australian worker to understand.

CPABCom (Accounting)
Published: 28 July 2026